Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs11300999 chr4:87949654 TC/T 1.97E-5 256 30.77 36.33 19.8 KM Plot
SARC rs113199390 chr19:9829523 TATAC/T 4.68E-5 251 33.48 26.93 14.82 KM Plot
SARC rs11344831 chr3:53092279 TC/T 0 257 2.13 31.35 32.4 KM Plot
SARC rs113575180 chr3:53131043 G/C 0 255 31.93 31.97 2.13 KM Plot
SARC rs113669912 chr8:129356053 G/A 2.22E-13 256 33.9 19.62 3.97 KM Plot
SARC rs113855341 chr3:52999223 T/TA 1.98E-14 255 31.1 34.57 1.17 KM Plot
SARC rs113856300 chr9:138760296 G/GT 8.17E-5 255 31.1 36.4 24.15 KM Plot
SARC rs113995589 chr3:53132372 A/T 0 250 32.88 27.12 2.13 KM Plot
SARC rs11408832 chr17:63175696 T/TG 0 255 33.77 19.17 3.53 KM Plot
SARC rs11449809 chr12:26061719 C/CA 4.13E-6 256 32.88 31.93 17.93 KM Plot
SARC rs114562844 chr3:52991584 C/T 2.18E-14 254 30.93 34.57 1.17 KM Plot
SARC rs115214068 chr15:40242571 A/C 6.86E-5 254 30.77 35.37 13.4 KM Plot
SARC rs11573709 chr9:110085255 C/T 4.0E-5 258 31.27 37.63 16.5 KM Plot
SARC rs11644071 chr16:78173685 G/C 2.04E-5 248 35.97 29.9 15.2 KM Plot
SARC rs11648242 chr16:78182228 G/C 4.18E-6 255 36.27 29.9 13.27 KM Plot